Questions & Answers
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Single Cell ATAC
Sample Prep - Nuclei
- What is the highest spin speed and spin time recommended for nuclei isolation for Single Cell ATAC or Single Cell Multiome assays?
- Is there a nuclei isolation protocol for ATAC in plants?
- I'm having trouble accurately counting nuclei. What can I do?
- Can I sort nuclei for Single Cell ATAC sequencing or Single Cell Multiome ATAC + GEX?
- How do I perform a lysis timeline to optimize my nuclei isolation for Single Cell ATAC sequencing?
- How can I optimize my nuclei prep for Single Cell ATAC sequencing?
- Where can I find the barcode whitelist for Single Cell ATAC product?
- Does Cell Ranger ATAC filter out mitochondrial reads?
- Does cellranger-atac aggr redo peak calling?
- [error] Entry 0 in sample_defs are missing input FASTQs
- In scATAC-seq, how are the z-scores for transcription factor motif enrichment calculated?
- How can I convert the peak-barcode matrix from Cell Ranger ATAC 1.x to a CSV file?