Software
Software for the Visium Solution
- How can I convert the feature-barcode matrix from Space Ranger 1.x to a CSV file?
- Can I manually mark spots covered by tissue in my Visium experiment?
- Where can I find the Space Ranger barcode whitelist and their coordinates on the slide?
- How do I use the Loupe Browser to estimate the number of tissue covered spots in my Visium sample?
- Can I use spaceranger mkfastq to demultiplex my data if I sequenced 8bp of the index reads instead of 10?
- Can Space Ranger and Loupe be used to analyze data from the product developed by Spatial Transcriptomics before 10x acquired it?