Software
- Where can I find the barcode whitelist for Single Cell ATAC product?
- Does Cell Ranger ATAC filter out mitochondrial reads?
- Does cellranger-atac aggr redo peak calling?
- [error] Entry 0 in sample_defs are missing input FASTQs
- In scATAC-seq, how are the z-scores for transcription factor motif enrichment calculated?
- How can I convert the peak-barcode matrix from Cell Ranger ATAC 1.x to a CSV file?
- How do I calculate median number of peaks per cell for Cell Ranger ATAC?
- Does the Cell Ranger ATAC pipeline use static thresholds to call peaks and identify cell barcodes?
- How many UMIs can be detected for each cell by Cell Ranger ATAC?
- What types of dimensionality reduction and clustering are performed by Cell Ranger ATAC?