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Analysis Software

  • How can I verify the fiducial frame alignment for Visium HD was successful?
  • How do I find the CytAssist instrument firmware version that generated my CytAssist image?
  • How do I correct the red channel shift observed in my CytAssist image when running instrument firmware version 2.1?
  • How do I Compare the Sensitivity of Visium HD to Visium v2?
  • How do I generate a cloupe file for Visium HD Gene Expression data binned at a size other than 8 µm x 8 µm?
  • How do I calculate the percentage of the capture area covered, so that I can determine the recommended sequencing depth for Visium HD Spatial Gene Expression libraries?
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