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Software

  • How do you integrate multiple samples for Xenium analysis?
  • How can I convert coordinates between H&E image and Xenium data?
  • Why is Xenium Explorer telling me it “Cannot open required files”?
  • XOA v3.2 datasets do not require batch correction to be analyzed with previous XOA v3 datasets
  • Xenium Multimodal Cell Segmentation on muscle
  • Import annotations into Xenium Explorer
  • Boundary stain shows cell morphology better than the interior stain
  • Brain fraction of transcripts within cells is low
  • Rescue Xenium transcripts outside cells
  • How can I ensure each cell has a high-quality transcript when importing third-party segmentation for Xenium Ranger?
  • How XA v2 pipeline changes impact data comparability
  • Is Xenium data usable despite a few high NCPs?
  • What is the Xenium ‘Negative control probe counts per control per cell’ metric?
  • What are the Xenium image scale factors?
  • How does Xenium perform cell segmentation?
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