cellranger-atac aggr redo peak calling?
cellranger-atac aggr pipeline redo peak calling while preserving the same sets of barcodes identified as cells from
cellranger-atac count analysis.
First, we combine all the fragments from all the input libraries (optionally with depth normalization). Then we rerun the peak-calling algorithm using all the fragments while retaining the same cell barcodes from
Relevant support documentation: Cell Ranger ATAC aggr pipeline