Question: Where can I find the barcode whitelist(s) for Single Cell Multiome (ATAC + GEX) product?
Answer: The barcode whitelist for Single Cell Multiome (ATAC + GEX) product is called 737k-arc-v1.txt.gz.
You can find two separate barcode whitelist files bundled inside your Cell Ranger ARC installation:
-
The ARC Multiome Gene Expression whitelist can be found here:
<path_to_cellrangerarc>/cellranger-arc-x.y.z/lib/python/cellranger/barcodes/737K-arc-v1.txt.gz -
The ARC Multiome ATAC whitelist can be found here:
<path_to_cellrangerarc>/cellranger-arc-x.y.z/lib/python/atac/barcodes/737K-arc-v1.txt.gz
Products: Single Cell Multiome
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