Question: Can I sequence Multiome libraries on the Nextseq 1000/2000?
Answer: We have not yet performed any in-house testing on the NextSeq 1000/2000 instrument. However, we do not anticipate that there will be any issues with sequencing Multiome Gene Expression libraries on the NextSeq 1000/2000. Note that the Nextseq 1000/2000 systems do not require a custom recipe for sequencing.
We do not currently support running Multiome ATAC libraries on NextSeq1000/2000 due to fundamental changes in the data processing. Guidelines to run Multiome ATAC on Nextseq 2000 will be updated in the upcoming months.
Products: Single Cell Multiome ATAC + GEX