Question: Are there methods for identifying multiplets or doublets in single-cell gene expression analysis?
Answer: At present, there is no explicit support for multiplet identification in the Cell Ranger gene expression analysis pipeline other than for the analysis of "barnyard" or mixed-species datasets mapped to a multiple-species reference.
Below are some third-party tools for detecting doublets/multiplets in single-cell gene expression datasets:
Please contact the respective developers of each tool for more information.
Disclaimer: This article and code-snippet are provided for instructional purposes only. 10x Genomics does not support or guarantee the code.