Question: Where can I find the barcode whitelist for Single Cell ATAC product?
Answer: The barcode whitelist for Single Cell ATAC product is called 737K-cratac-v1.txt.gz.
You can find Single Cell ATAC barcode whitelist files bundled inside your Cell Ranger ATAC installation:
- The ATAC whitelist can be found here:
<path_to_cellranger-atac>/cellranger-atac-x.y.z/lib/python/atac/barcodes/737K-cratac-v1.txt.gz
Please note that Single Cell ATAC v1, v1.1, and v2 all share the same barcode whitelist.
Products: Single Cell ATAC
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